PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012571315.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family LBD
Protein Properties Length: 171aa    MW: 19190.7 Da    PI: 5.1805
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012571315.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260118.63.6e-376991100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +Ca+Ck+lrr+Ca++C++apyfp+e+p+kfa+vhk+FGasn      +lp ++r++a++slvyeA+ar+rdPvyG+vg i+ lq+q+ ql+ +la
  XP_012571315.1   6 PCASCKLLRRRCAQECIFAPYFPSEDPRKFAIVHKVFGASN------ELPIHQRSEAVNSLVYEANARVRDPVYGCVGAISYLQNQVTQLQMQLA 94 
                     7**************************************97......78999******************************************* PP

          DUF260  96 llkee 100
                     ++++e
  XP_012571315.1  95 VAQAE 99 
                     *9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.1575100IPR004883Lateral organ boundaries, LOB
PfamPF031958.9E-36697IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MGGSSPCASC KLLRRRCAQE CIFAPYFPSE DPRKFAIVHK VFGASNELPI HQRSEAVNSL  60
VYEANARVRD PVYGCVGAIS YLQNQVTQLQ MQLAVAQAEI LCIQMQQDPV SVTSSLPTYV  120
DQDDKLMLLS ENSNCYEPHL LPQYPNFPSS SSSSSNVFQD YEPLKRESFW T
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU6515811e-105CU651581.9 M.truncatula DNA sequence from clone MTH2-66L10 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012571315.11e-125PREDICTED: LOB domain-containing protein 12 isoform X2
SwissprotQ8LBW35e-70LBD12_ARATH; LOB domain-containing protein 12
TrEMBLG7J0R02e-97G7J0R0_MEDTR; Lateral organ boundaries (LOB) domain protein
STRINGGLYMA18G06530.11e-86(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.11e-69LBD family protein